But they have never truly exploited logic-based inference, except for some small academic efforts.
https://github.com/orgs/stardog-union/
Looks like Knowledge Graph and semantic reasoner are the search terms du'jour, I haven't tracked these things since OpenCyc stopped being active.
Humans may not be able to effectively trudge through the creation of trillions of little rules and facts needed for an explicit and coherent expert world model, but LLMs definitely can be used for this.
Of course the underlying storage can be (and often is) a bunch of specially prepared relational tables.
But the strength in graph databases comes from restating the problem in different way, with query languages targeting the specific problem space.
Similarly there are tasks where SQL will be plainly better.
The SQL standard now includes syntactic sugar for 'Property Graph Query'. Implementations are still in the works AIUI, but can be expected in the reasonably near future.
And for efficient implementation the database underneath still needs to have extended graph support (in fact, I find it hilarious that Oracle seems to be spearheading it, as they have previously canceled their graph support around 2012 - enough that I wrote about how it was deprecated and removed from support in my thesis in 2014.
My approach, Cyc's, and others are fundamentally flawed for the same reason. There's a low level reason why deep nets work and symbolic engines are very bad.
"I wonder what is the closest thing to Cyc we have in the open source realm right now?".
See:
https://github.com/therohk/opencyc-kb
https://github.com/bovlb/opencyc
https://github.com/asanchez75/opencyc
Outside of that, you have the entire world of Semantic Web projects, especially things like UMBEL[1], SUMO[2], YAMATO[3], and other "upper ontologies"[4] etc.
[1]: https://en.wikipedia.org/wiki/UMBEL
[2]: https://en.wikipedia.org/wiki/Suggested_Upper_Merged_Ontolog...
StarDog is not FOSS, that github repo is for various utils around their proprietary package in my understanding, actual engine code is not open source.
Reactome, is a graph, because that is the domain. But technically it does little with that fact (In my disappointed opinion).
Given that GO and Reactome are also relatively small academic efforts in general...
I have begun crafting an explanation, but not sure when it will be ready.
But when you recognize that thinking predates symbolic language, and start thinking about what thinking needs, you get closer to the answer.