The fundamental thing you are missing here is that the charter of the non-profit and structure of their ownership of the for-profit (and the for-profit's operating agreement) is all designed in a way that is supposed to eliminate financial incentives for stakeholders as being the thing that the company and non-profit are beholden to.
It may turn out that the practical reality is different from the intent, but everything you're talking about was a feature and not a bug of how this whole thing was set up.