Could you do the same thing with your real issue tracking software? Your agent could use an MCP to create a Jira ticket and create subtasks or tasks for your subagents? Then you don't need to clutter up your repo with these MD files and .beads directories and what not.
>>frodo7+(OP)
Yes you can. I've experimented a bit with using the `gh` CLI tool to work with issues in a GitHub repository, but I don't particularly like the aesthetics of having a bunch of LLM-generated prose in my issue trackers like that.