But they're not real apps, they're webpages. They are two different things, both very useful, but both very different.
It's a very good thing for a user to be aware that there's a real and important difference between a signed binary from the App Store which lives on their device and a blob of minified JS coming down from quite literally anywhere.
And they're correct to feel that way! Apps, when made correctly, feel way better to use! It's a bit surprising to me you attribute this preference for ""native"" apps to "whatever reason". I've always felt the difference was extremely stark and obvious, I couldn't imagine getting them confused. It seems you're a little misinformed with how most native apps are built; it's just not true that any meaningful number of apps you interact with regularly with "simply wrap their web app in a WebView." In fact, if you try to ship an app which does solely this (webpage in a WebView), Apple will reject it. Have you built any mobile apps, kelthuzad?
I encourage you to try Google Docs or Youtube from a mobile browser and observe whether you find differences between that and the native experience. I think you'll be surprised :)