Before you say, "well, they're the government, why don't they just compromise the secure boot CA"; the problem is that cryptographic signatures create evidence. If someone finds your boot sector malware you don't want it to be attributable - but signatures from an already-trusted entity create exactly the kind of paper trail you'd rather avoid. If Microsoft signs a boot sector virus, then it's obviously a US government cyberweapon, and any companies that find it in their systems will start suing. In this particular context, secure boot is a policy of "no execution without attribution".
[0] Which nowadays can even be done in a browser. Modern browsers actually have to have throttling and CPU usage limits because of this.