Even if it's deliberate, I don't see how people can complain. Google has outright blocked Breitbart for years. They prevent results from that domain from appearing at all unless you specifically force it with site: and apparently HN does the same. Politically motivated censorship and restricting "reach" is just how Silicon Valley rolls. Pre-Musk Twitter did freeze the New York Post's account and many other much worse things. It'd be a shame for Musk to be doing this deliberately, even though it seems unlikely. But that's the problem with creating a culture where that sort of behavior is tolerated, isn't it? One day it might be turned around on you.
Does the value added by sources like the NYT outweigh the negatives of being occasionally biased or outright wrong? Yes.