You might as well just write instructions in English in any old format, as long as it's comprehensible. Exactly as you'd do for human readers! Nothing has really changed about what constitutes good documentation. (Edit to add: my parochialism is showing there, it doesn't have to be English)
Is any of this standardization really needed? Who does it benefit, except the people who enjoy writing specs and establishing standards like this? If it really is a productivity win, it ought to be possible to run a comparison study and prove it. Even then, it might not be worthwhile in the longer run.
Splitting the docs into neat modules is a good idea (for both human readers and current AIs) and will continue to be a good idea for a while at least. Getting pedantic about filenames, documentation schemas and so on is just bikeshedding.